![]() See output: star-fusion.fusion_candidates.tsv (or. Please help! Here's the error message in details (including functional previous steps): abridged.tsv version)"īUT, then things go wrong while running the FusionInspector part (and thus the workflow does not reach the stage where Trinity can work on preparing the sequences). ![]() ![]() STAR-Fusion finishes running, printing this message: $STAR-Fusion -CPU 90 -output_dir OUTDIR_NAME -verbose_level 2 -genome_lib_dir PATH_TO_GENOME_LIB_DIR -left_fq PATH_TO_LEFT_FQ.fastq.gz -right_fq PATH_TO_RIGHT_FQ.fastq.gz -FusionInspector inspect -denovo_reconstruct -examine_coding_effect While running STAR-Fusion on some RNA-Seq data with following parameter settings (irrespective of -FusionInspector inspect or validate): ![]() I am using STAR-Fusion version 1.4.0, and STAR version STAR_2.6.1a. I am trying to obtain the sequences of fusion-transcripts. ![]()
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